PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.371810.1
Common NameCsa_4G434480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 156aa    MW: 17653.2 Da    PI: 9.059
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.371810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14355155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    ++ +hn+ Er RR++iNs ++ Lr llP+ +   + kKls  ++  +   YI +Lq
  Cucsa.371810.1  3 KKLSHNASERDRRKKINSLYSSLRALLPSsD---QMKKLSNPATISRILSYIPELQ 55
                    6789*************************66...9999***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.437254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-12355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-14370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-15373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-11359No hitNo description
SMARTSM003532.5E-10860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAKKLSHNAS ERDRRKKINS LYSSLRALLP SSDQMKKLSN PATISRILSY IPELQQQVEE  60
QMRKKEELMA AMVGQEVKND EEKKMKSAVS SSSSIISASR LSRHEMAIQI STDINGGQRN  120
YLSEILICLE EEGLLLLNAS SFESFDGKIF HNLHLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16285RKKEELMAAMVGQEVKNDEEKKMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818781e-164LN681878.1 Cucumis melo genomic scaffold, anchoredscaffold00036.
GenBankLN7132621e-164LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144337.21e-107PREDICTED: transcription factor bHLH100-like
TrEMBLA0A0A0L0Z21e-108A0A0A0L0Z2_CUCSA; Uncharacterized protein
STRINGVIT_13s0047g00450.t017e-53(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-29bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]